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Faculty excellence: Promotions and tenure 2018

Promotions and tenure 2018

The College of Science congratulates these 20 faculty on receiving promotions and/or tenure for the 2017-18 academic year.

“The success of our faculty is essential to the success of our students,” said Roy Haggerty, dean of the College of Science. “I am proud of our faculty who are outstanding researchers, scholars, teachers and mentors to our students.”

'I want to also thank our Promotion and Tenure Committee for devoting a significant amount of time engaged in the intense review process to award the best candidates for promotion and/or tenure,” added Haggerty.

Tremendous consideration goes into each promotion and tenure decision. The Provost’s Office, the College of Science Dean’s office, department heads, Promotion and Tenure Committee members, faculty, external reviewers, student evaluation committees, and individual faculty members all spend many hours preparing, processing and reviewing the documentation.

Congratulations to the following science faculty!

Biochemistry and Biophysics Department

(Photos in order)
Dr. Adrian “Fritz” Gombart will be promoted to Professor of Biochemistry and Biophysics, effective September 16, 2018.

Dr. Ryan Mehl will be promoted to Professor of Biochemistry and Biophysics, effective September 16, 2018.

Integrative Biology Department

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Dr. Andrew Bouwma will be promoted to Senior Instructor I of Integrative Biology, effective July 1, 2018.

Dr. Sarah Henkel will be promoted to Associate Professor, Senior Research of Integrative Biology, effective July 1, 2018.

Dr. Mark Novak will be promoted to Associate Professor of Integrative Biology and granted indefinite tenure, effective September 16, 2018.

Dr. Rebecca Terry will be promoted to Associate Professor of Integrative Biology and granted indefinite tenure, effective September 16, 2018.

Mathematics Department

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Dr. Mary Beisiegel will be promoted to Associate Professor of Mathematics and granted indefinite tenure, effective September 16, 2018.

Dr. Vrushali Bokil will be promoted to Professor of Mathematics, effective September 16, 2018.

Dr. Elaine Cozzi will be promoted to Associate Professor of Mathematics and granted indefinite tenure, effective September 16, 2018.

Dr. Torrey Johnson will be promoted to Senior Instructor I of Mathematics, effective September 16, 2018.

Dr. Elise Lockwood will be promoted to Associate Professor of Mathematics and granted indefinite tenure, effective September 16, 2018.

Dr. Holly Swisher will be promoted to Professor of Mathematics, effective September 16, 2018.

Dr. David Wing will be promoted to Senior Instructor I of Mathematics, effective September 16, 2018.

Microbiology Department

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Dr. Kimberly Halsey will be promoted to Associate Professor of Microbiology and granted indefinite tenure, effective September 16, 2018.

Dr. Ryan Mueller will be promoted to Associate Professor of Microbiology and granted indefinite tenure, effective September 16, 2018.

Dr. Martin Schuster will be promoted to Professor of Microbiology, effective September 16, 2018.

Physics Department

Oksana Ostroverkhova in front of shrubbery

Dr. Oksana Ostroverkhova will be promoted to Professor of Physics, effective September 16, 2018.

Statistics Department

(Photos in order)
Katie Jager will be promoted to Senior Instructor I of Statistics, effective July 1, 2018.

Juliann Moore will be promoted to Senior Instructor I of Statistics, effective September 16, 2018.

Dr. Lan Xue will be promoted to Professor of Statistics, effective September 16, 2018.

Thanks to all of the committee members who served on the College of Science Promotions and Tenure Committee this year.

Elisar Barbar (rotating off)
Kate Field (rotating off)
Alix Gitelman (rotating off)
Margie Haak
Henri Jansen (chair, rotating off)
Patrick De Leeneer (rotating off)
Sastry Pantula
Indira Rajagopal (rotating off)
Vince Remcho
Janet Tate (rotating off)
Barb Taylor (rotating off)

The following faculty have been elected to serve on the College’s Promotion and Tenure Committee for 2018-19. These faculty were elected to serve by a vote, according to the College’s P&T rules.

Vince Remcho, 2016-19, committee chair in 2018-19
Rich Carter, 1 remaining term, 2018-19
Dee Denver, 1 remaining term, 2018-19
Tom Dick, 2 remaining terms, 2018-20
Michael Freitag, 3 remaining terms, 2018-21
Steve Giovannoni, 2 remaining terms, 2018-20
Margie Haak, 1 remaining term, 2017-19
Sally Hacker, 3 remaining terms, 2018-21
David McIntyre, 3 remaining terms, 2018-21
Sastry Pantula, 2 remaining terms, 2017-20
Scott Peterson, 2 remaining terms, 2018-20

picture of Microbiomes

Statistical innovations help decode the human microbiome

Gut Microbiota

The human microbiome—the vast collection of microorganisms living in and on the bodies of humans—can lead us to a better understanding of human health and disease, not to mention accelerate the development of therapeutic drugs. However, the vastness and complexity of microbiome data require advances in statistical methodology and software for an accurate analysis of host-microbiome interactions. Statistics faculty Yuan Jiang, Duo Jiang and Thomas Sharpton are developing novel statistical methods to bridge the gap between the human microbiome and microbiome-based healthcare.

They were awarded a prestigious four-year $770K grant by the National Institute of General Medical Sciences (NIGMS), one of the U.S. National Institutes of Health (NIH). Yuan Jiang, associate professor of statistics, is the lead researcher and principal investigator on the project, “Network-based statistical methods to decode interactions within microbiomes.” Duo Jiang, assistant professor of statistics and Thomas Sharpton, assistant professor of microbiology and statistics, are co-investigators on this grant.

This project will advance scientific understanding of the functions and operations of microbiomes by developing statistical methods and models to study biological interactions between microbes or between microbes and their host.

“The new statistical methodologies will leverage recent advances in graphical models and high dimensional statistics to tackle unmet analytical challenges encountered in the analysis of modern microbiome data,” said Duo Jiang.

Interest in the role of the microbiome in human health and disease has increased rapidly within the last decade. However, available tools and technologies do not adequately capture the full scope and complexities of microbial interactions within a community. For example, a correlation type analysis employed to model microbial interactions cannot filter out misleading co-occurrence patterns in a community: two microbes that independently interact with a third but not with one another may appear to correlate.

“The currently used statistical models fail to account for specific properties of microbiome data, including its heterogeneous compositional count nature, the complex environmental context, and its evolutionary structure,” Yuan Jiang explained.

“Additionally, existing algorithms are often not scalable to the huge size of microbiome data. Therefore, new statistical methods and algorithms need to be developed to better answer the scientific questions.”

The NIGMS grant will help Jiang and his team pioneer new statistical methods “built on conditional dependencies that disentangle biological interactions from marginal correlations to produce mechanistically and evolutionarily relevant network models of how microbes interact with one another and their host.”

The methods and software produced by this project will “transform the discovery of how these microbes interact with one another and influence or respond to human physiology.” A broader understanding of microbiomes and their role in disease etiology will open the doors to engineer and utilize microbiomes important to human health to develop new drugs, therapeutic probiotics and clinical diagnostics.

The grant will support graduate research assistants (GRAs). Two GRAs from statistics and one GRA from microbiology will be a part of this interdisciplinary collaboration. “Such a form provides students with opportunities for experiential learning in diverse scientific areas (e.g., statistics, computer science, microbiology, evolution, and genetics) as well as experience in teamwork and interdisciplinary research,” said Yuan Jiang.

desert hill with clear sky

150 years of science for land and sun

By Katharine de Baun, Srila Nayak

Painted Hills, Oregon

Note: this article is part of a yearlong series on the distinguished tradition of scientific research pertaining to Oregon State’s 150th anniversary and its four land-grant designations. From our fall 2017 issue: 150 years of science for sea and space(Introduction), On the shoulders of giants, Oregon State Science: The many "firsts" in 150 years. From our spring 2018 issue: The significance of OSU's sea-, space-, sun- and land-grant designations, "Milestones: Oregon State Science at the helm for 150 years."

While the College of Science at Oregon State University was formally established in 1932, science programs and departments have been instrumental in shaping the evolution of research and education at the university since its 1868 land grant designation.

In fact, long before OSU’s College of Agricultural Sciences came into existence, the new agricultural curriculum was first taught in the Department of Chemistry in 1870 paving the way for the scientific study of agriculture for the first time in the Pacific Northwest. Such pioneering science programs since the earliest days of the institution were responsible for OSU’s land grant designation making it one of three land-grant colleges in the country at that time (The other two were the University of Illinois at Urbana-Champaign and the University of California at Berkeley).

The first professors of engineering at OSU in the 1890s were also professors of mathematics. Some of the university’s earliest engineering disciplines would not have flourished if it were not for the fundamental sciences. A four-year mining engineering curriculum was established in the Department of Chemistry in 1900 that led to the consolidation of early engineering programs in metallurgy.

The chemistry department was also the home of the first geology courses. It would not be an exaggeration to say that the natural and physical sciences at OSU have shaped and guided the growth of the world-class research and education that takes place across all STEM (science, technology, engineering and mathematics) fields in the university today.

OSU land grant: From plows to touch screens

Science has played a founding role in carrying out Oregon State’s Land Grant mission from its origins in the Morrill Act of 1862, whose focus was to teach agriculture, military tactics and “mechanical arts” or engineering. Chemistry was hailed, for example, as “the cornerstone of Scientific Agriculture” in the 1869-70 course catalog. And in 1899, today’s microbiology department arguably began with a single course in bacteriology, to help understand and eliminate bacterial diseases of crops. Mathematics and physics courses were a core part of the mechanical arts curriculum and the fledgling department of mechanical engineering, formed in 1889.

In the 20th century, the University’s land-grant mission expanded to adapt to the changing social and economic needs, including a new forestry program in response to Oregon’s growing timber industry and a growing emphasis on engineering after World War II. As the scope of the land-grant mission widened, science continued to be front and center. The chemistry department was home to new four-year programs in pharmacy (1898), mining (1900) and forestry (1906). By 1912, bacteriology was driving innovation across various industries and considered essential training for “any student properly equipped in Dairying, Agriculture, Agronomy, Pharmacy, Domestic Science, etc.”

In the 21st century, Oregon State under President Ray’s leadership aims to be among the top 10 land grant institutions in America, with a focus on three signature areas: the Science of Sustainable Earth Ecosystems, Human Health and Wellness, and Economic Growth and Social Progress. The College of Science is a key contributor with pioneering programs and research in biohealth, the life sciences, marine and environmental sciences and, increasingly, statistics, as students and researchers across a wide variety of fields learn to interpret and gain often revolutionary insights from big data.

An integral part of OSU’s land-grant mission is also to foster public outreach and engagement, and science has long been at the heart of its various agricultural experiment stations and Cooperative Extension Service. Through evidence-based programs designed to make Oregon farms more sustainable, to teach gardeners how to raise bees, reduce pesticides or compost; or encourage children to pursue STEM careers through its engaging, hands-on 4-H programs — science provides both a body of evidence and a mode of inquiry that supports both backyard sleuths and future astrophysicists.

Science also contributes to economic growth with a constant stream of research-inspired innovation, producing 48 new inventions and securing 18 U.S. patents since 2011 alone. Local, state and global industries have profited from sustainable materials that began as lab experiments in Gilbert Hall, from more efficient batteries and greener touch screens, to a new heat-resistant paint using YImMn blue, the new pigment discovered by chemist Mas Subramanian.

Lastly, the College’s current investment in student diversity and success continues a long and proud tradition of opening STEM fields to all, science being a necessary part of the “liberal and practical education” for the “industrial classes” since the passage of the 1862 Morrill Act. As the University’s land-grant mission continues to evolve, science will remain at the heart – and the edge – of discovery and innovation.

Sun: Harnessing natural resources for a healthy planet

For nearly 150 years, the natural sciences at OSU have been at the forefront of research and innovation bridging the biological sciences and the physical sciences (physics and chemistry) for environmental sustainability, renewable energy and a healthy planet.

Chemist David Ji has pioneered the invention of new long-lasting and high-performance energy materials in the form of batteries for the purposes of sustainable energy storage. By employing carbon-based materials and hydrocarbon solids, Ji has designed new battery devices such as the world’s first hydronium-ion battery, potassium-ion battery, dual-ion battery and sodium-ion battery which can easily and cheaply store energy from the wind and sun. Ji’s innovations in the area of energy storage have ushered in a new era of renewable and sustainable batteries.

Materials physicist Janet Tate is a key player in the field of renewable energy technologies that includes development of transparent conductors and photovoltaic materials. Tate is a principal investigator at the prestigious Center for Next Generation of Materials Design—an Energy Frontier Research Center (EFRC) funded by the U.S. Department of Energy.

By integrating the talent and expertise of leading scientists such as Tate, the EFRC aims to “accelerate transformative discovery” and innovate new materials on the atomic and molecular scale to enhance energy security and protect the global environment. At the Center for Next Generation of Materials Design, Tate studies metastable alloys to design inorganic semiconductors for optoelectronic applications (electronic devices that source, detect and control light).

The OSU Sun Grant program is supported by funds from the U.S. Department of Agriculture and the Department of Energy aimed at the creation of biofuels and other environmentally sustainable green technologies to meet growing energy demands and promote opportunities for bio-based economic growth in rural communities.

One of the key sun grant projects on genetic modification of poplar trees to produce plant-based plastics will be extended in new, innovative directions with the added expertise of statistical methods. In collaboration with College of Forestry Professor Steven Strauss, statistician Yuan Jiang is investigating better methods of mapping the genes that control the process of regeneration and transformation needed for genetic engineering by using DNA sequence databases, imaging and computations.

This five-year, $4 million project is funded by the National Science Foundation and is an important advance in developing genetically engineered crop species in ways that help meet our present challenges without unintended environmental effects.

Javier Rojo sitting in office space

Statistician receives national award for building diversity, exceptional mentoring

Korvis Professor of Statistics Javier Rojo

Korvis Professor of Statistics Javier Rojo is the recipient of the 2018 Dr. Etta Z. Falconer Award for Mentoring and Commitment to Diversity. Dr. Rojo will receive his award at the Infinite Possibilities Conference (IPC) on April 14 at Howard University in Washington, D.C. The award recognizes individuals who have demonstrated a professional commitment to mentoring and increasing diversity in the mathematical sciences.

Rojo joined OSU's Department of Statistics as the inaugural Korvis Professor of Statistics in January 2017. The professorship is supported by statistics alumnus Rich Carone, CEO of Korvis Automation, a leading technology and manufacturing company based in Corvallis with offices in Singapore and Shanghai. The position supports OSU science faculty in physics or quantitative sciences to help advance research in the field of statistics and in the world of science more generally.

Rojo leads and directs the nationally recognized Research for Undergraduates Summer Institute of Statistics (RUSIS), which was selected by the American Mathematical Society for its award "Mathematics Programs That Make a Difference." RUSIS was honored as a model program for encouraging undergraduates to pursue graduate studies in the mathematical sciences and for increasing the numbers of underrepresented minorities and women in mathematics and statistics.

Funded by the National Science Foundation and the National Security Agency for the last 15 years, RUSIS is the country’s first Research Experiences for Undergraduate (REU) Program in the field of statistics. It has a highly successful track record in recruiting, training and guiding underrepresented minority and economically disadvantaged students towards advanced degrees in mathematics and statistics.

The Institute conducts a 10-week intensive summer program for the study of statistics and its applications for a cohort of 12-15 students every year. Under Rojo’s leadership, the program has taken phenomenal strides: After 10 years, the REU program reported that 85% of the undergraduates who attended the Summer Institute were admitted to Ph.D. programs around the country, with roughly 61% of students hailing from underrepresented populations and 53% of the participants have been female.

Rojo has been commended by both students and colleagues for his exceptional dedication to mentoring and teaching in the field of statistics leading to highly positive outcomes.

"As a first-generation college graduate and female in the field of statistics, the RUSIS program has greatly influenced the type of person that I am. Dr. Rojo taught me how to collaborate, be adaptable, well-rounded, and gave me confidence in my research and work. I feel that the RUSIS program laid the foundation for me to be a strong competitor upon entering graduate school. Today, I attribute my success in both undergraduate and graduate school, as well as my career to Dr. Rojo’s RUSIS program," writes a RUSIS alumna.

In an appreciative tribute, a colleague writes:

"One of the amazing things about RUSIS is that Javier is willing to take risks; he is willing to accept students who don’t have a great GPA or who do not have a substantial background in mathematics. Yet his data are enviable and show that, in spite of this, his RUSIS graduates are pursuing postgraduate studies. I have heard over and over again from the students that I send to RUSIS that it was an amazing experience."

Falconer was an educator and mathematician and one of the first African-American women to receive a Ph.D. in mathematics. A professor of mathematics at Spelman College and Norfolk State University, Falconer once said, "My entire career has been devoted to increasing the number of African-American women in mathematics and mathematics-related careers." Over the course of Falconer’s tenure at Spelman College, the number of women majoring in science, mathematics, and engineering tripled to nearly 40 percent of the student body.

The IPC is a national conference that is designed to promote, educate, encourage and support women of color interested in mathematics and statistics. IPC 2018 is organized by the Mathematical Sciences Research Institute in Berkeley, California, with funding from the Mathematical Sciences Institutes Diversity Initiative, a NSF program.

Read more about Javier Rojo and RUSIS.

Sastry Pantula shaking hands with Mukherjee president

Oregon State statisticians in Hyderabad, India

Sastry Pantula at the 2017 International Indian Statistical Association (IISA) Conference

Statisticians from Oregon State University are in Hyderabad, India for the 2017 International Indian Statistical Association (IISA) Conference, December 27-30, 2017. The conference will take place at the Hyderabad International Convention Center. The theme of the conference is "Statistics and Data Science for Better Life, Society and Science."

Professor Sastry Pantula is a panelist in a discussion on Women in Statistics and Data Science. He is also a speaker in a special panel, entitled "Are Statisticians Prepared for the Data Science challenge?-A Career Development Panel." Pantula is a member of 2017 IISA's International Advisory Committee.

Assistant Professor Sharmodeep Bhattacharyya will present his research at a session on "Estimation and Inference in Networks and Graphical Models." Bhattacharyya will also chair a session on "Probability, Random Matrices, Big Data."

The 2016 IISA conference was hosted by the Department of Statistics at Oregon State at the Learning Innovation Center on campus, August 18-21. Emphasizing the theme of "Statistical and Data Sciences: A Key to Healthy People, Planet and Prosperity," the conference was attended by 200 statisticians from the United States and other parts of the world.

Read more: Welcoming hundreds of statisticians to campus
International statistics conference comes to campus

children looking at science themed booth

From the lab to the world: OMSI Science Communication Fellowships

The OMSI Science Communication Fellowship Program

Applications are open for Oregon's top academic and professional fellowship program: The Oregon Museum of Science and Industry's OMSI Science Communication Fellowship. For spring 2018, the fellowship is open to researchers or science professionals including faculty, graduate students,technicians, or other individuals in STEM and health related professions.

The deadline for applications is Wednesday, November 1.

Held primarily in Corvallis, OR on the OSU campus, OMSI Fellows participate in a series of professional development workshops that cover science communication best practices and provide opportunities for participants to practice new skills and techniques. In collaboration with OMSI, each Fellow will develop a unique hands-on educational activity designed to communicate their research to public audiences and will join OMSI in engaging museum visitors with these activities at Meet a Scientist events.

A series of four professional development workshops will focus on building skills to effectively communicate scientific research with broader audiences. Workshops are 3-4 hours each, spaced over the course of three to four months.

Tuition for the program is $1850 per participant. The Science Dean's Office will cover half the tuition for all accepted College of Science applicants.

The OMSI Science Communication Fellowship Program is an excellent way to fulfill broader impact and outreach goals for grant-funded research at OSU. Many of the participants in the Fellowship program secure their tuition through broader impacts or education and outreach components of current research grants.

An online application and further information about the Fellowship program can be found on OMSI's website.

arial shot of Baltimore cityscape

Statistics researchers at JSM 2017

Joint Statistical Meetings 2017 hosted in Baltimore

Faculty and students from the Department of Statistics are participating in the Joint Statistical Meetings (JSM) 2017 in Baltimore, July 29 - August 3. JSM is one of the largest statistical conferences in the world, hosting more than 6,000 statisticians from academia, industry and government and featuring more than 600 research sessions and poster presentations.

Topics at JSM 2017 range from statistical applications to methodology and theory to the expanding boundaries of statistics, such as analytics and data science.

College of Science Dean Sastry Pantula, who is also a Professor of Statistics, will be the luncheon speaker and present a talk, "Strengths, Opportunities and Challenges in the era of BIG Data: An Asian Statistician Perspective." He will discuss: The strengths Asian statisticians bring to the profession, opportunities that exist for Asian statisticians in the era of BIG data across all sectors, how universities and professional societies can help build future leaders in statistics, the needs and challenges Asian statisticians face and how Asian statisticians can strive for excellence, enhance diversity and foster harmony in the profession.

Pantula is delivering a talk during the Pre-Conference Workshop, which is part of a continuing education course, " Preparing Statisticians for Leadership: How to See the Big Picture and Have More Influence, Part 2." The course, which is being held Sunday morning on July 30, addresses what leadership is and how statisticians can improve and demonstrate leadership to affect their organizations. It features leaders from all sectors of statistics speaking about their personal journeys and offering guidance on personal leadership development with a focus on the larger organizational/business view and influence.

Pantula is also participating in a panel discussion of current and former Deans and Provosts of Arts and Sciences who are statisticians. Panelists will share their perspectives and experiences about how to advance the mission of statistics departments in the current university environment. The panel is on Thursday, August 3.

All OSU Statistics alumni are welcomed at a special reception for them on Tuesday, August 1 from 5:30-7:00 p.m. at the Hilton Hotel on Pratt Street in Tubman A. The event offers the perfect occasion to reconnect with other alumni, OSU faculty, students and friends. We look forward to catching up with alumni to hear about their accomplishments and successes!

Below is a complete list of our faculty and student who are presenting talks and poster presentations at JSM 2017. Many of our faculty and alumni are also representing OSU on various committees, are presenting papers on which they are co-authors and participating in other ways at the conference, but are not listed below.

microscopic view of mating diatoms

Diatoms have sex after all, and ammonium puts them in the mood

By Steve Lundeberg

Diatom Arachnoidiscus

New research shows a species of diatom, a single-celled algae thought to be asexual, does reproduce sexually, and scientists learned it’s a common compound – ammonium – that puts the ubiquitous organism in the mood.

The findings, published today by microbiologist Kimberly Halsey in PLOS One, may be a key step toward greater understanding of the evolution of sexual behavior and also have important biotechnology implications.

picture of diatom mating with one another

An arrow points to Thalassiosira pseudonana sperm cells and wedges indicate the flagella that allow the cells to swim to an egg for fertilization. Artificial coloring denotes chlorophyll (blue) and DNA (red).

“Our discoveries solve two persistent mysteries that have plagued diatom researchers,” said Halsey. “Yes, they have sex, and yes, we can make them do it.”

Diatoms hold great potential as a bioenergy source and also for biosensing. In addition, their intricate, silica cell walls offer promising nanotechnology applications for materials chemists and drug-delivery researchers.

Halsey and collaborators in botany and statistics from OSU’s Colleges of Science and Agricultural Sciences, including microbiologist Alexandra Weinberg and statistician Yuan Jiang, studied the “centric” Thalassiosira pseudonana species of diatom, a model organism for researchers; it’s one of two diatoms, the other being the “pennate” diatom Phaeodactulum tricornutum, to have had its genome sequenced.

“Diatoms are amazing; their silica frustules are beautiful and exquisite,” Halsey said. “Now that we can control their sexual pathway, that should open the door to being able to make crosses between different diatoms with different characteristics. We should be able to breed them just like we do with corn or rice or strawberries to select for traits that are really desirable.”

Read the full story here.

Faculty chatting with one another

Faculty excellence: Promotions and Tenure, 2017

Faculty who received promotions and/or tenure for the 2016-17 academic year

The College of Science congratulates these 18 faculty for receiving promotions and/or tenure for the 2016-17 academic year.

“P&T decisions are one of the most important things I do. I am happy to recognize our outstanding faculty,” said Sastry G. Pantula, dean of the College of Science. “The success of our faculty is essential to the success of our students. Our faculty are not only scholars and teachers, but also are mentors to our students, the next generation of leaders in science.”

Tremendous consideration goes into each promotion and tenure decision. The Provost’s office, the College of Science dean’s office, department heads, promotion and tenure committee members, faculty, external reviewers, student evaluation committees, and of course the individual faculty members all spend many hours preparing, processing and reviewing the documentation. The process is extremely rigorous in order to award the best candidates for promotion and/or tenure.

Special thanks to our College of Science Promotion and Tenure Committee for devoting a significant time engaged in the intense review process.

Congratulations to the following science faculty! We are proud of you.

Biochemistry & Biophysics Department

Dr. Michael Freitag will be promoted to Professor of Biochemistry & Biophysics, effective, September 16, 2017.

Dr. Colin Johnson will be promoted to Associate Professor of Biochemistry & Biophysics and granted indefinite tenure, effective, September 16, 2017.

Dr. Viviana Perez will be promoted to Associate Professor of Biochemistry & Biophysics and granted indefinite tenure, effective, September 16, 2017.

Dr. Kari van Zee will be promoted to Senior Instructor I of Biochemistry & Biophysics, effective, September 16, 2017.

Chemistry Department

Dr. Michael Burand will be promoted to Senior Instructor I of Chemistry, effective, July 1, 2017.

Dr. Xiulei (David) Ji will be promoted to Associate Professor of Chemistry and granted indefinite tenure, effective, September 16, 2017.

Dr. Daniel Myles will be promoted to Senior Instructor II of Chemistry, September 16, 2017.

Dr. Kristin Ziebart will be promoted to Senior Instructor I of Chemistry, effective, July 1, 2017.

Integrative Biology Department

Dr. Dee Denver will be promoted to Professor of Integrative Biology, effective, September 16, 2017.

Dr. Doug Warrick will be promoted to Professor of Integrative Biology, effective, September 16, 2017.

Mathematics Department

Dr. Ren Guo will be promoted to Associate Professor of Mathematics and granted indefinite tenure, effective, September 16, 2017.

Dr. Hoe Woon Kim will be promoted to Senior Instructor I of Mathematics, effective, September 16, 2017.

Dr. Yevgeniy Kovchegov will be promoted to Professor of Mathematics, effective September 16, 2017.

Dr. Clayton Petsche will be promoted to Associate Professor of Mathematics and granted indefinite tenure, effective, September 16, 2017.

Dr. Daniel Rockwell will be promoted to Senior Instructor I of Mathematics, September 16, 2017.

Statistics Department

Dr. Claudio Fuentes will be promoted to Associate Professor of Statistics and granted indefinite tenure, effective, September 16, 2017.

Dr. Yuan Jiang will be promoted to Associate Professor of Statistics and granted indefinite tenure, effective, September 16, 2017.

Dr. Debashis Mondal will be promoted to Associate Professor of Statistics and granted indefinite tenure, effective, September 16, 2017.

Juan Restrepo in his classroom

Former musician, aspiring surfer, mathematician: Juan Restrepo, a life of diversity

By Katharine de Baun

Juan M. Restrepo, Mathematician

Some of the most interesting lives don’t move forward in a straight line. Mathematician Juan M. Restrepo thought he would spend his life as a professional musician, for example, until he stepped into an advanced math class and never looked back. Recently, he shared reflections on his life and work, including why a diverse, interdisciplinary approach is critical to his research.

You recently won the SIAM (Society of Industrial and Applied Math) Geosciences Career Prize for your outstanding contributions to the field of computational geoscience. Can you explain what computational geoscience is?

There are three ways to do science: theoretically, experimentally (this includes observation/field work) and computationally. Most scientific results now combine all three modalities. The award I received acknowledges the impact I’ve had in applied mathematics, specifically in developing new computational tools that make it feasible to pursue geoscience problems that were not amenable to existing computational tools. These tools allow us to tackle new and challenging questions in the field.

What are some of those new and challenging questions?

How to model and make predictions about massively complex systems like Earth’s climate or financial markets. Typically, in these systems, knowing something about each element in isolation is extremely helpful but doesn’t automatically lead to an understanding of the system as a whole. Complex systems have many degrees of freedom (as well as variables that cannot be precisely pinned down). So we are seeking ways to eke out a low dimensional representation of the system that either explains the basic mechanism behind the complex behavior, and/or enables us to capture the complexity with a smaller (usually finite-dimensional) number of degrees of freedom--all the while taking into account the consequences of uncertainties in the physics and its parameters.

I have also proposed new quantitative tools and techniques for improved forecasting, particularly in highly unstable systems like the weather and extreme or rare events like droughts and deluges. I have worked on statistical representations of high dimensional systems that then yield more manageable proxies of the full system. I have worked on tools that try to help us look into the near future and answer questions like “How warm is it getting?” or “What are the trends in today’s financial data?”

What makes this work so difficult?

For one, we don’t have a full understanding of a lot of things in isolation, let alone as interacting elements in larger systems. The types of problems I focus on have lots of small things that interact with each other and these, in turn, interact as groups in different ways.

To illustrate, I’ll use a problem that my student Dallas Foster, my collaborator Matthew Sottile and I are working on. The problem relates to how a collective group of ants react to certain environmental conditions. In a colony of tens of thousands of ants, the behavior of each ant requires a huge number of degrees of freedom to describe. One might think that understanding everything about each individual ant and understanding how each individual ant interacts would lead to answers on how a large collection of ants respond to their environment (never mind the fact that each individual ant would demand a whole library-worth of information). The traditional thing to do is to formulate a model for the large-scale behavior and forgo the small scale. But it turns out that there is only a very tiny number of problems for which one can generate a model of the group while ignoring small-scale interactions or individual agents. The collective ant case is representative of a myriad of problems where small scales cannot be ignored.

But it turns out that there is only a very tiny number of problems for which one can generate a model of the group while ignoring small-scale interactions or individual agents. The collective ant case is representative of a myriad of problems where small scales cannot be ignored.

In response to this type of problem, we are working on formulating a population model with a manageable number of degrees of freedom that reasonably describes the collective behavior, but does not ignore critical aspects of small-scale interactions of the ants or individual ants. The ‘dimension reduction’ we want to effect does not ignore critical small-scale interactions. Instead, the small-scale interactions are ‘upscaled’ so that they affect the collective, without requiring specific knowledge of the small scale. We will need to create a special type of statistics that allows us to ‘filter’ the small scale to get the collective effect of small-scale interactions at the larger scales of the group behavior.

You are so interdisciplinary – with multiple appointments across colleges in the Departments of Statistics, Electrical Engineering, Computer Science and Physical Oceanography. Is an interdisciplinary approach necessary to the questions you study?

A salient characteristic of my research output is that I tightly combine physics, mathematics, computation and data in the tools I develop. Hence, for me interdisciplinary exploration is necessary. A word of caution is in order, however. Although academia now considers interdisciplinary research a good thing, in practice, this modality of investigation is not suited for everyone. It can be career suicide for some, in fact.

Why? What are the dangers?

If you don’t achieve expertise in any particular subject, it can lead to not getting tenure, not getting grants, and not being perceived as “scholarly” enough. In academia, you are rewarded for developing mastery and this should be unique: this is what we call expertise. And without expertise, you risk not being consequential. Most commonly, without enough depth in a core discipline, you risk discovering something that's already known, or, worse yet, rediscovering something and doing a worse job at it.

So I advise my students to be aware of what their strengths are, what they’d like to work on, and then think strategically about how to get there. Some are more comfortable being specialists, and that’s fine. Applied mathematics, applied statistics and applied computer science are good homes for people with diverse interests, as they grapple with a variety of archetypical computational problems which are common to many engineering and science applications.

Interdisciplinary work makes perfect sense to me. But being interdisciplinary should not be considered synonymous with being diverse. The desire has never been stronger than it is today to tackle problems that cross disciplines and so there is a demand for people who have the ability and background to work across disciplines. But diversity in science has always been critical: we need diverse but expert ways to tackle problems, diverse but state-of-the-art techniques, etc. Diversity means working across disciplines, but it also means tackling problems with different specialized tools.

How did you personally arrive at having so many disciplinary strengths?

How I arrived at having so many interests is a colorful story. Believe it or not, I used to be a professional musician. Tired of the long hours, bad conditions and low pay, I went back to school to take a break from work. Having concentrated on music and philosophy as an undergraduate, I thought it would be fun to do something completely different and chose engineering. I had nothing to lose since this was just a break and I planned to return to music anyway. My first mathematics class, in partial differential equations, was a turning point.

What happened? Did the professor recognize you in some way?

The professor was Michael Tabor at Columbia University. He often says I was his “best music student.” [Laughs] I wasn’t all that bad; I got an A-. Professor Tabor, who oddly enough later became my boss when I was faculty at the University of Arizona, strongly suggested I consider a career in applied math. He also loves music and I spent a fair bit of time in his office discussing science and music. My intention was to return to music after my foray in engineering, but I did not return to music. From engineering I eventually switched to physics and mathematics. I had more questions of the “how” and “why” variety than of the “what for.”

That’s quite a switch. As a physics major, how did you then become interested in computational geoscience as a field?

Geosciences appealed to me because in many of its challenging problems one is faced with the interplay of diverse physics across vast scales of space and time. A love of the outdoors probably plays a factor, too—I spend a lot of time in adventure traveling, skiing, climbing, trekking and biking.

Your work has focused substantially on oceans.

I love the ocean and was completely smitten by the idea that there were scientists who could understand some aspects of what makes the ocean so amazing, and were bold enough to think that someday we could understand the oceans as a whole.

Specifically, I’m fascinated with the role played by oceans on the transport of heat around the globe, and the destabilizing role played by perturbations of the thermally- and salt-driven circulation we presently enjoy. I’m also interested in the role ocean transport plays in the movement of greenhouse gases and the maintenance of ice snow caps and their reflectance of the Sun’s radiation.

I am also fascinated by waves. The focus of my Ph.D. research was in a rather special wave called a soliton. It has wonderful/rich underlying mathematical structure. Incidentally, there are folks here at Oregon State who are world experts in solitary waves, the family of waves in which solitons belongs. I’m also exploring the role that waves play in Earth’s climate and the interaction between ocean waves and currents. I’ve developed models for how specific types of sandbars form and used supercomputers to characterize the fundamental forces on sand particles as they are forced by shearing and wavy ocean flows.

Presently I am developing a model for ocean oil spills.

young Juan Restrepo standing on beach with surfboard

Restrepo in his surfing days

Speaking of waves, you used to be a surfer. Does that experience have anything to do with your interests now as a scientist?

When I was a postdoc in Chicago I crewed for several sailing teams. When I was at UCLA I decided to learn to surf. The first board I borrowed came back decorated with duct tape. I was terrible, but usually the first in, the last one out. The good surfers tolerated me, perhaps because they thought I made for good shark food.

But I was a good source of information: I tracked swells, tides and wind, and predicted the best time to get to the beach; I had a good idea of when waves were worth riding and understood how wind affected waves. Several of my nearshore scientific studies were inspired by these experiences: for example, my interest in how waves transport sand, pollutants and swimmers. One of my recent results explains why flotsam and jetsam parks itself outside of the break zone, a finding relevant to tracking pollution in the nearshore, also known as "sticky waters."

You are a strong advocate for diversity in science. Where does that passion/commitment come from?

Innovation is the most significant competitive, technological, cultural and economic asset this country has had. It may be argued that it is in peril presently.

Science thrives on innovation, and innovation is strongly correlated with diversity. Diversity is essential in collective adaptation, and thus essential to evolutionary biology. For similar reasons, it is also essential to science.

There are more practical reasons for encouraging diversity: for example, with regard to gender, it is patently stupid to ignore 50 percent of the potential workforce. Diversity leads to collective work adaptation. It also leads to a culture of learning and of listening.

Diversity makes organic sense to me: my background and my life history is a story of diversity. I grew up in a multi-ethnic neighborhood in big cities, in a family of artists who hailed from three continents. Diversity is essential to my work: I tend to work with people who contribute specialized skills and appreciate my creativity and ability to draw ideas from diverse disciplines.

What are your hopes for the future of computational geosciences as a method/field/set of inquiries and what are you working on now?

I am working with a team of statisticians, engineers, and social scientists to formulate adaptive response strategies to disasters. As usual, I am taking a "diverse" approach: in addition to instrumental data, we want to incorporate citizen cell phone reports to produce quantitative data that allows us to tell what's happening as the disaster is taking place in real time.

We need anthropologists to exploit social media and to interpret citizen data. We are using ideas of statistical physics to formulate cluster dynamics of populations responding to disasters. We are combining statistically physical models and data to develop fast algorithms that allow us to forecast and test options for future responses based on past disasters.

OSU is a perfect research environment for this project: it is supportive of diversity, and it builds upon many of our research strengths. It’s also locally relevant, given that we live in the Cascadia Zone, and globally significant because what we learn here will impact on disaster response elsewhere.

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